monarch-database
Query the Monarch Initiative knowledge graph for disease-gene-phenotype associations across species. Integrates OMIM, ORPHANET, HPO, ClinVar, and model organism databases. Use for rare disease gene discovery, phenotype-to-gene mapping, cross-species disease modeling, and HPO term lookup.
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---
name: monarch-database
description: Query the Monarch Initiative knowledge graph for disease-gene-phenotype associations across species. Integrates OMIM, ORPHANET, HPO, ClinVar, and model organism databases. Use for rare disease gene discovery, phenotype-to-gene mapping, cross-species disease modeling, and HPO term lookup.
license: CC0-1.0
metadata:
skill-author: Kuan-lin Huang
---
# Monarch Initiative Database
## Overview
The Monarch Initiative (https://monarchinitiative.org/) is a mHow to Use
Recommended: Install to project (local)
mkdir -p .claude/skills
curl -o .claude/skills/monarch-database.md \
https://raw.githubusercontent.com/K-Dense-AI/claude-scientific-skills/main/scientific-skills/monarch-database/SKILL.mdSkill is scoped to this project only. Add .claude/skills/ to your .gitignoreif you don't want to commit it.
Alternative: Clone full repo
git clone https://github.com/K-Dense-AI/claude-scientific-skillsThen reference at scientific-skills/monarch-database/SKILL.md
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