deeptools
NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.
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---
name: deeptools
description: NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.
license: BSD license
metadata:
skill-author: K-Dense Inc.
---
# deepTools: NGS Data Analysis Toolkit
## Overview
deepTools is a comprehensive suite of Python command-line tools designed for processing and analyzing high-throughput sequencing data. Use deepTools to perform quality control, normalHow to Use
Recommended: Install to project (local)
mkdir -p .claude/skills
curl -o .claude/skills/deeptools.md \
https://raw.githubusercontent.com/K-Dense-AI/claude-scientific-skills/main/scientific-skills/deeptools/SKILL.mdSkill is scoped to this project only. Add .claude/skills/ to your .gitignoreif you don't want to commit it.
Alternative: Clone full repo
git clone https://github.com/K-Dense-AI/claude-scientific-skillsThen reference at scientific-skills/deeptools/SKILL.md
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